{ "data_resource": "PDBTM", "resource_version": " 1017", "software_version": "3.2.134", "resource_entry_url": "https://pdbtm.unitmp.org/entry/4qkl", "model_coordinates_url": "https://pdbtm.unitmp.org/api/v1/entry/4qkl.trpdb", "release_date": "21/07/2023", "pdb_id": "4qkl", "includes_het_groups": false, "chains": [ { "chain_label": "A", "additional_chain_annotations": { "type": "alpha", "num_tm": "1" }, "residues": [ { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "1", "aa_type": "ACE" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "2", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "3", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "4", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "5", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "6", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "7", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "8", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "9", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "10", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "11", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "12", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "13", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "14", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "15", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "16", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "17", "aa_type": "HIS" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "18", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "19", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "20", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "21", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "22", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "23", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "24", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "25", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "26", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "27", "aa_type": "NH2" } ] }, { "chain_label": "A-2", "additional_chain_annotations": { "type": "alpha", "num_tm": "1" }, "residues": [ { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "1", "aa_type": "ACE" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "2", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "3", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "4", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "5", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "6", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "7", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "8", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "9", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "10", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "11", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "12", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "13", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "14", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "15", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "16", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "17", "aa_type": "HIS" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "18", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "19", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "20", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "21", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "22", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "23", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "24", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "25", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "26", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "27", "aa_type": "NH2" } ] }, { "chain_label": "A-3", "additional_chain_annotations": { "type": "alpha", "num_tm": "1" }, "residues": [ { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "1", "aa_type": "ACE" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "2", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "3", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "4", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "5", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "6", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "7", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "8", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "9", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "10", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "11", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "12", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "13", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "14", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "15", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "16", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "17", "aa_type": "HIS" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "18", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "19", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "20", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "21", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "22", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "23", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "24", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "25", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "26", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "27", "aa_type": "NH2" } ] }, { "chain_label": "A-4", "additional_chain_annotations": { "type": "alpha", "num_tm": "1" }, "residues": [ { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "1", "aa_type": "ACE" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "2", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "3", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "4", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "5", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "6", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "7", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "8", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "9", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "10", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "11", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "12", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "13", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "14", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "15", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "16", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "17", "aa_type": "HIS" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "18", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "19", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 3, "confidence_classification": "curated" } ], "pdb_res_label": "20", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "21", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "22", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "23", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "24", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "25", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "26", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 7, "confidence_classification": "curated" } ], "pdb_res_label": "27", "aa_type": "NH2" } ] } ], "sites": [ { "site_id": 1, "label": "Side1" }, { "site_id": 2, "label": "Side2" }, { "site_id": 3, "label": "Transmembrane Alpha Helix" }, { "site_id": 4, "label": "Transmembrane Beta strand" }, { "site_id": 5, "label": "Transmembrane Re-entrant Loop" }, { "site_id": 6, "label": "Interfacial Helix" }, { "site_id": 7, "label": "Unknown localization" }, { "site_id": 8, "label": "Membrane Inside" } ], "evidence_code_ontology": [ { "eco_term": "computational combinatorial evidence used in automatic assertion", "eco_code": "ECO_0000246" } ], "additional_entry_annotations": { "tm_type": "Tm_Alpha", "membrane": { "normal": { "x": 0, "y": 0, "z": 10.75 }, "radius": 16, "transformation_matrix": { "rowx": { "x": 0.98038691, "y": 0.03272986, "z": 0.19434582, "t": -16.14598465 }, "rowy": { "x": 0.02328424, "y": 0.95997161, "z": -0.27912775, "t": -42.70443726 }, "rowz": { "x": -0.19570228, "y": 0.27817836, "z": 0.94038153, "t": -11.07068539 } } }, "biomatrix": { "matrix_list": [ { "matrix_id": "1", "apply_to_chain_list": [ { "chain_id": "A", "new_chain_id": "A-2" } ], "transformation_matrix": { "rowx": { "x": -1, "y": 0, "z": 0, "t": 29.60000038 }, "rowy": { "x": 0, "y": -1, "z": 0, "t": 88.80000305 }, "rowz": { "x": 0, "y": 0, "z": 1, "t": 0 } } }, { "matrix_id": "2", "apply_to_chain_list": [ { "chain_id": "A", "new_chain_id": "A-3" } ], "transformation_matrix": { "rowx": { "x": 0, "y": -1, "z": 0, "t": 59.20000076 }, "rowy": { "x": 1, "y": 0, "z": 0, "t": 29.60000038 }, "rowz": { "x": 0, "y": 0, "z": 1, "t": 0 } } }, { "matrix_id": "3", "apply_to_chain_list": [ { "chain_id": "A", "new_chain_id": "A-4" } ], "transformation_matrix": { "rowx": { "x": 0, "y": 1, "z": 0, "t": -29.60000038 }, "rowy": { "x": -1, "y": 0, "z": 0, "t": 59.20000076 }, "rowz": { "x": 0, "y": 0, "z": 1, "t": 0 } } } ] }, "ent_cif_mapping_results": { "ent_cif_chain_map": { "A": [ "A" ] }, "cif_chain_derivatives": { "A-2": "A", "A-3": "A", "A-4": "A" }, "pdbtm_derivatives_and_cif_chain_map": { "B": [ "A-2" ], "C": [ "A-3" ], "D": [ "A-4" ] } } } }