{ "data_resource": "PDBTM", "resource_version": " 1017", "software_version": "3.2.134", "resource_entry_url": "http://pdbtm.unitmp.org/entry/1qjp", "model_coordinates_url": "http://pdbtm.unitmp.org/api/v1/entry/1qjp.trpdb", "release_date": "11/08/2003", "pdb_id": "1qjp", "includes_het_groups": false, "chains": [ { "chain_label": "A", "additional_chain_annotations": { "type": "beta", "num_tm": "8" }, "residues": [ { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "1", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "2", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "3", "aa_type": "LYS" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "4", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "5", "aa_type": "ASN" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "6", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "7", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "8", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "9", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "10", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "11", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "12", "aa_type": "LYS" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "13", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "14", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "15", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "16", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "17", "aa_type": "GLN" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "31", "aa_type": "HIS" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "32", "aa_type": "GLU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "33", "aa_type": "ASN" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "34", "aa_type": "LYS" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "35", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "36", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "37", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "38", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "39", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "40", "aa_type": "PHE" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "41", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "42", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "43", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "44", "aa_type": "GLN" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "45", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "46", "aa_type": "ASN" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "47", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "48", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "49", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "50", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "51", "aa_type": "PHE" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "52", "aa_type": "GLU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "53", "aa_type": "MET" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "54", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "55", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "56", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "57", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "58", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "59", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "60", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "61", "aa_type": "MET" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "62", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "63", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "71", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "72", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "73", "aa_type": "LYS" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "74", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "75", "aa_type": "GLN" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "76", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "77", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "78", "aa_type": "GLN" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "79", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "80", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "81", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "82", "aa_type": "LYS" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "83", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "84", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "85", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "86", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "87", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "88", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "89", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "90", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "91", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "92", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "93", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "94", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "95", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "96", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "97", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "98", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "99", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "100", "aa_type": "MET" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "101", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "102", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "103", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "104", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "105", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "106", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "107", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "108", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "109", "aa_type": "ASN" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "110", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "111", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "112", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "113", "aa_type": "LYS" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "114", "aa_type": "ASN" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "115", "aa_type": "HIS" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "116", "aa_type": "ASP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "117", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "118", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "119", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "120", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "121", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "122", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "123", "aa_type": "PHE" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "124", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "125", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "126", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "127", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "128", "aa_type": "GLU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "129", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "130", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "131", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "132", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "133", "aa_type": "PRO" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "134", "aa_type": "GLU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "135", "aa_type": "ILE" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "136", "aa_type": "ALA" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "137", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "138", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "139", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "140", "aa_type": "GLU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "141", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "142", "aa_type": "GLN" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "143", "aa_type": "TRP" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "144", "aa_type": "THR" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "145", "aa_type": "ASN" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "160", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 1, "confidence_classification": "curated" } ], "pdb_res_label": "161", "aa_type": "MET" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "162", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "163", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "164", "aa_type": "LEU" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "165", "aa_type": "GLY" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "166", "aa_type": "VAL" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "167", "aa_type": "SER" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "168", "aa_type": "TYR" }, { "site_data": [ { "site_id_ref": 4, "confidence_classification": "curated" } ], "pdb_res_label": "169", "aa_type": "ARG" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "170", "aa_type": "PHE" }, { "site_data": [ { "site_id_ref": 2, "confidence_classification": "curated" } ], "pdb_res_label": "171", "aa_type": "GLY" } ] } ], "sites": [ { "site_id": 1, "label": "Side1" }, { "site_id": 2, "label": "Side2" }, { "site_id": 3, "label": "Transmembrane Alpha Helix" }, { "site_id": 4, "label": "Transmembrane Beta strand" }, { "site_id": 5, "label": "Transmembrane Re-entrant Loop" }, { "site_id": 6, "label": "Interfacial Helix" }, { "site_id": 7, "label": "Unknown localization" }, { "site_id": 8, "label": "Membrane Inside" } ], "evidence_code_ontology": [ { "eco_term": "computational combinatorial evidence used in automatic assertion", "eco_code": "ECO_0000246" } ], "additional_entry_annotations": { "membrane": { "normal": { "x": 0, "y": 0, "z": 10 }, "radius": 26, "transformation_matrix": { "rowx": { "x": 0.51432371, "y": 0.82267183, "z": -0.24224409, "t": -21.44506264 }, "rowy": { "x": 0, "y": 0.28246874, "z": 0.9592765, "t": -40.20320129 }, "rowz": { "x": 0.85759616, "y": -0.49337864, "z": 0.14528036, "t": -24.001297 } } }, "ent_cif_mapping_results": { "ent_cif_chain_map": { "A": [ "A" ] }, "cif_chain_derivatives": [], "pdbtm_derivatives_and_cif_chain_map": [] } } }